Specific restrictions in a Commander Effect still stay in effect, so if you pull Boba in the LOTF Sealed events, you'll need one of the other Mandalorians as well to make use of his CE. Luckily, Boba's CE is hardly even necessary for him to be worth his 57 points.
Luckily, for this set, looks like only Boba and the RC Training Sargent have CEs which are character/faction specific. Though I guess you could consider the RCTS's SA and the Vong Shaper's SA to be fairly specific as well. But all the other CEs affect either general 'followers' or 'characters'.