Ok, based on suggestions made by people, here is a updated version:
New Naboo Nastiness 2.0:
Queen Amidala
Captain Panaka of Theed
R7 Droid
Rodian Diplomat
Mon Mothma
Admiral Yularen
Commander Gree
Jolee Bindo
Mas Ameda
Naboo Soldier x16
Uggie Demo x3
200pts, 28 activations
I took out Typho, and added in 2 uggies, a Rodian Diplomat to take care of SS, and an R7 to overide doors and maybe limit Master Thon and Bastilla. I'm not so sure an R7 is the absolute best defense vs. Thon, but i do know what is. Unfortunately I don't really know what is best to take out in order to fit Zuckuss,Bounty Hunter into the squad. If I had Zuckuss, I could get rid of the Rodian Diplomat since I'd have boardwide SS disruption for 2 turns at least. Zuckuss is the only way, imo, to contain Thon and keep him away from my Soldiers. Zuckuss would work well since Recon from Yularen will give you a moderate chance to win init and get Snare Gun to stick Thon in his place. Thon is a scary beast and he does pose a huge threat to my squad, and so does Bastilla in a way. At least with Bastilla, she eventually will run out of force, and then you can start to move and destroy. It is a slow tactic and probably not best suited for tourney play. Bastilla is a major threat to every squad that is dependant on CE's (except for the Vong). At least for tourney play, this squad is completely unconcerned with Lancer and Yobuck squads.
Hopefully Overide will help protect against Thon, but it all depends on the map, and if the oppenent is carrying a few overide peices of its own that could be a problem potentially. The good thing is you will be able to out activate most squads. A person that can potentially be dropped is Jolee Bindo, but I hate to lose the +2 extra attack he gives to my Soldiers. If I want Zuckuss added, I could drop Bindo, a Rodian Diplomat and the R7. Not sure if that is the best way to go, but its a possibility. Any suggestions for further improvements/ways to deal with the Thon and Bastilla threat would be greatly appreciated.